gclda.utils.plot_brain¶
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gclda.utils.plot_brain(data, underlay, x=0, y=0, z=0)[source]¶ Create a figure of a brain.
Generates a 2x2 figure of brain slices in the axial, coronal, and sagittal directions (bottom right subplot is left empty). A functional image is overlaid onto the anatomical template from a nibabel image.
Parameters: - data :
numpy.ndarrayofnumpy.float32 3D array of voxel values to plot over structural underlay.
- underlay :
nibabel.Nifti1Image Structural scan to use as underlay in figure.
- x :
int, optional X-coordinate in stereotactic space to use for sagittal view in figure. Default is 0.
- y :
int, optional Y-coordinate in stereotactic space to use for coronal view in figure. Default is 0.
- z :
int, optional Z-coordinate in stereotactic space to use for axial view in figure. Default is 0.
Returns: - fig :
matplotlib.figure.Figure A 2x2 figure with three views of the brain (axial, coronal, and sagittal).
- data :